BigelowLab/mpatools

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Language
R
License
MIT License
Created over 2 years ago
Updated over 2 years ago

BigelowLab/mpatools

BigelowLab

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Tools for analysis of marine protected areas

thredds

THREDDS Crawler for R using xml2 package

ndfd

A RESTful R interface to the NWS National Digital Forecast Database

fvcom

Convenience tools for accessing FVCOM datasets.

obpgcrawler

A limited THREDDS crawler for programmatically working with the OpeNDAP data offerings from http://oceandata.sci.gsfc.nasa.gov/opendap/

iceout

Provides convenient access to New England iceout data from \url{https://me.water.usgs.gov/iceout_data}.

spnc

A simplified interface between spatial classes and NetCDF data sources.

threddscrawler

A generic THREDDS crawler for R

gorg-classifier

Produce taxonomic and functional annotations of shotgun metagenomes, metatranscriptomes and metaproteome sequences.

dismotools

R: extra tools for the raster and dismo packages.

maree

An R wrapper around a local install of xtide

topotools

R tools for use topography/bathymetry datasets.

oharvester

Assembly of scripts and tutorials for harvesting oceanographic data.

rasf

Extra tools for working with raster and sf packages in R

nearth

R tools for easy navigation and reading of locally stored data files from [Natural Earth](http://www.naturalearthdata.com/)

MeCDC

Serve COVID19 data and analyses from Maine CDC

cofbb

Center for Ocean Forecasting spatial bounding boxes

oisster

Tools in R to download and manage local versions of OISST

flowcamr

R utilities for working with FlowCam data

viruscope

Identify viral sequences in single amplified genomes

Jupyter Notebook

charlie

rscripting

Simple tools for scripting with Rscript

tcof-dog-and-pony

A series of coding vignettes from the Center for Ocean Forecasting

neracoos

R-language tools for working with NERACOOS thredds served data.

sag-mg-recruit

Read recruitment pipeline 2.0 for comparison of sag abundance across metagenomes

gittools

gittools is a set of wrappes around various git commands such as `git grep`

stcovid

stcovid - state and county centric data from COVID19 data hub

CrossRiver

project-templates

Project templates in R and python

nam218

A simplified R interface to NOMADS NAM Grid 218 forecasts and archives

genologicsr

API wrapper for GLS API v2

menssp

Access, query and download from RESTful Maine DMR ESRI Map Service.

blastxml

Extract data from Blast XML files

ghcnd

R package to query and retrieve Global Historical Climatology Network daily data

gom-series

rtofs

OPeNDAP access to rtofs data from R

seaweed-spectral-library

Code, workflows, sample details and miscellany for building a seaweed spectral library

Jupyter Notebook