BiAPoL/blog

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BiAPoL/blog

BiAPoL

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Most of us study and work at the Bio-image Analysis Technology Development group at the DFG Cluster of Excellence “Physics of Life” at the TU Dresden. We blog about image data science, knowledge exchange and research data management in the life sciences.

Bio-image_Analysis_with_Python

Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecular and Cellular Bioengineering (CMCB) / University of Technology, TU Dresden

Jupyter Notebook

napari-clusters-plotter

A napari plugin for clustering objects according to their properties.

Jupyter Notebook

PoL-BioImage-Analysis-TS-GPU-Accelerated-Image-Analysis

PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track

imagej-macro-cheat-sheet

Quantitative_Bio_Image_Analysis_with_Python_2022

This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.

napari-stress

Interactive surface analysis in napari for bio-mechanical stress measurement

napari-crop

Jupyter Notebook

PoL-BioImage-Analysis-TS-Early-Career-Track

Image-data-science-with-Python-and-Napari-EPFL2022

HIP_Introduction_to_Napari_and_image_processing_with_Python_2022

DIGS-BB_LM_Course_Bio-Image_Analysis_2022

on_the_fly_image_processing_napari

Jupyter Notebook

napari-polo

A napari Plugin for Polarised Light Microscopy Analysis

hackathon-london-2022-11

Collection of code from the CLIJ-CZI-EOSS hackathon at the Francis Crick Institute in Londin

Jupyter Notebook

biapol-utilities

Collection of utility functions from the Bio-image Analysis Technology Development group at the DFG Cluster of Excellence "Physics of Life", TU Dresden, Dresden, Germany

napari-clusters-plotter-example-notebooks

This repository hosts jupyter notebooks with examples of napari-clusters-plotter usage

Jupyter Notebook

biapol-taurus

Fileserver-to-HPC

Monitors a folder and automatically processes new subdirectories on an HPC cluster.

Annotation-in-3D-blogpost

This repository hosts a proposal for an annotation template for community annotations

Jupyter Notebook

example-repo-sphinx

Example repository to demonstrate automated documentation with Sphinx.

Jupyter Notebook

CCI_Gothenburg_ImageJ_Macro_Course_2021

microscope-gym

An open python smart-microscopy API

HIP_Summer_School_Image_Data_Visualization_101

Jupyter Notebook

guanine-crystal-analysis

A plugin for the guanine crystal segmentation, classification and characterization in the zebrafish eye