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Homer3
MATLAB application for fNIRS data processing and visualizationBeam-Propagation-Method
AtlasViewer
MATLAB application for imaging and reconstruction of fNIRS data on atlas anatomylaserSpeckleImaging
Tools for processing laser speckle images from a camerapysnirf2
Python package for reading, writing and validating Shared Near Infrared Spectroscopy Format (SNIRF) filesOCTA
Optical Coherence Tomography Angiography Data ProcessingninjaGUI
fNIRS data acquisition GUINN22-Technical-Documents
Repository for the storage and dissemination of NN22 technical documentsVAN_DataSets
This project contains micro-Vascular Anatomical Network Data Sets from a consortium of research groups working to develop automated methods to analyze cerebral microvascular networks.SpeckleNoiseModel
Code to model the noise of a fiber based NIRS system, as well as to plot the figures from associated papersfunctionalSpectralSpeckle
snirf_quality_report
snirf2bids
Python package for generating BIDS-fNIRS files from SNIRF filesg1OCTA
3D Optical Coherence Tomography Angiography for minimizing tail artifactsDynamicSpeckleModel
MonteCarloWaveModel
angioReg
register two volumetric angiograms together using an affine transformation then corrected by non-linear scattered data interpolationSerialSectOCT
DataTree
psoct_vessel_graphing
Suite of tools for segmenting vessels from PS-OCT images and then converting the segments to a graph.VAN_modeling
prDOCT
Phase resolved Doppler OCT for blood flow velocity imaging of capillary networkSpeckleDynamicsModelFitting
WavelengthSensitivityinFNIRS
vascularDataViz
Annotation_tools
MATLAB applications for myelin and cell annotation of qBRM and 2P imagesninjaNIRS21
rsfcIOS
calculate resting state functional connectivity from IOS data.DLSOCT
Dynamic Light Scattering-Optical Coherence Tomography data processing for blood flow velocity and diffusion coefficient measurementLove Open Source and this site? Check out how you can help us