BRL-BCM/pathogenicity_calculator

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Created almost 8 years ago
Updated over 6 years ago

BRL-BCM/pathogenicity_calculator

BRL-BCM

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ClinGen Pathogenicity Calculator

EDec

EDec (Epigenomic Deconvolution) is a technique that, starting from methylation and gene expression profiles of bulk tissue samples, infers cell type composition of each input sample as well as DNA methylation and gene transcription profiles of constituent cell types.

CTD

CTD method for “connecting the dots” in weighted graphs

Jupyter Notebook

allelic_epigenome

Allele-Registry

This repository contains the source code for the ClinGen Allele Registry. The Allele Registry provides unique identifiers for alleles. It can be accessed at https://reg.genome.network/.

XDec

XDec (Expression Deconvolution) is a deconvolution tool for RNA-seq expression data. Starting with complex gene expression profiles of bulk tissue or biofluid samples, can estimate constituent cell type or cargo type composition of each input sample as well as gene transcription profiles of constituent cell/cargo types.

ASPRE-analysis

Allelic_variant_call_pipeline

Pipeline for allele-specific variant calling from RNAseq

exRnaDataSlicer

This program will provide coverage from given region of interst bed file and the the selected exRNA Atlas biosamples

pash

Positional Hashing Method for Sequence Comparison

genboree

Stand-alone Genboree server with core services. The installation package includes GenboreeKB and all dependencies.

variantNamingPipeline