Discover BRL-BCM/Allele-Registry Open Source project by @BRL-BCM

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This repository contains the source code for the ClinGen Allele Registry. The Allele Registry provides unique identifiers for alleles. It can be accessed at https://reg.genome.network/.

EDec

EDec (Epigenomic Deconvolution) is a technique that, starting from methylation and gene expression profiles of bulk tissue samples, infers cell type composition of each input sample as well as DNA methylation and gene transcription profiles of constituent cell types.

CTD

CTD method for “connecting the dots” in weighted graphs

Jupyter Notebook

pathogenicity_calculator

ClinGen Pathogenicity Calculator

JavaScript

allelic_epigenome

Perl

XDec

XDec (Expression Deconvolution) is a deconvolution tool for RNA-seq expression data. Starting with complex gene expression profiles of bulk tissue or biofluid samples, can estimate constituent cell type or cargo type composition of each input sample as well as gene transcription profiles of constituent cell/cargo types.

ASPRE-analysis

HTML

Allelic_variant_call_pipeline

Pipeline for allele-specific variant calling from RNAseq

exRnaDataSlicer

This program will provide coverage from given region of interst bed file and the the selected exRNA Atlas biosamples

Ruby

pash

Positional Hashing Method for Sequence Comparison

C++

genboree

Stand-alone Genboree server with core services. The installation package includes GenboreeKB and all dependencies.

JavaScript

variantNamingPipeline

Ruby

BRL-BCM/Allele-Registry

BRL-BCM

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