BMIRDS/HistoGAN

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Python
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GNU General Publi...
Created almost 5 years ago
Updated over 3 years ago

BMIRDS/HistoGAN

BMIRDS

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Code for "Generative Image Translation for Data Augmentation in Colorectal Histopathology Images" full paper at ML4H Workshop at NeurIPS 2019.

deepslide

Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.

3dMRISegmentation

Code for NeuroImage: Clinical paper "Automatic post-stroke lesion segmentation on MR images using 3D residual convolutional neural network."

medical-image-preprocessing

Functions for pre-processing large images

WSI-PLP

DPool; Previously POPPSlide: Patient Outcome Prediction Pipeline using Whole Slide Images

titan-rtx-benchmark

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Code for "Multi-Ontology Refined Embeddings (MORE): A Hybrid Multi-Ontology and Corpus-based Semantic Representation Model for Biomedical Concepts" in the Journal of Biomedical Informatics.

Slide2Graph

Graph Convolutional Networks for Whole-Slide Analysis in PyTorch

DifficultyTranslation

Code for "Difficulty Translation in Histopathology Images" full paper at Artificial Intelligence in Medicine (AIME) 2020.