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deepslide
Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.HistoGAN
Code for "Generative Image Translation for Data Augmentation in Colorectal Histopathology Images" full paper at ML4H Workshop at NeurIPS 2019.3dMRISegmentation
Code for NeuroImage: Clinical paper "Automatic post-stroke lesion segmentation on MR images using 3D residual convolutional neural network."medical-image-preprocessing
Functions for pre-processing large imagesWSI-PLP
DPool; Previously POPPSlide: Patient Outcome Prediction Pipeline using Whole Slide Imagestitan-rtx-benchmark
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Code for "Multi-Ontology Refined Embeddings (MORE): A Hybrid Multi-Ontology and Corpus-based Semantic Representation Model for Biomedical Concepts" in the Journal of Biomedical Informatics.Slide2Graph
Graph Convolutional Networks for Whole-Slide Analysis in PyTorchLove Open Source and this site? Check out how you can help us