BGI-shenzhen/Reseqtools

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GNU General Publi...
Created almost 10 years ago
Updated almost 3 years ago

BGI-shenzhen/Reseqtools

BGI-shenzhen

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A Toolkit for analyzing next-generation DNA Re-Sequencing data

PopLDdecay

PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files

LDBlockShow

LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files

VCF2Dis

VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Format

RectChr

Multi-level visualization of genomic statistical variables on rectangular chromosomes

BamDeal

BamDeal: a comprehensive toolkit for bam manipulation

FxTools

FxTools: a comprehensive toolkit for FASTA and FASTQ file manipulation

RRSelection

RRSelection: A linkage disequilibrium method to detect selection region across population VCF

gcaPDA

gamete cell assisted chromosome-scale phased diploid assembler

BamSplit

A efficient software tools to split Bam form all chromosome together to each chr one bam

BamCoverage

BamCoverage: A efficient software tools to calculate every site depth of genome based bam files

SoapNewCov

SoapNewCov: A efficient software tools to Calculate site depth of genome based soap

soap2bam

soap2bam: A efficient software tools to convert soap to bam format