Arkadiy-Garber/MagicLamp

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GNU General Publi...
Created almost 5 years ago
Updated about 1 year ago

Arkadiy-Garber/MagicLamp

Arkadiy-Garber

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A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.

FeGenie

HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes

SprayNPray

Rapid and simple taxonomic profiling of genome and metagenome contigs

BagOfTricks

A collection of python and bash scripts for various bioinformatics-related tasks

ParaHunter

Identification of gene paralogs in genomes, and calculation of dS and dN/dS values for paralogous gene pairs

LithoGenie

HMM-based identification and categorization of genes and operons relevant to chemolithoautotrophic metabolisms

Taxonsluice

Reference-based, heuristic algorithm for identification of potential contaminants in mothur-formatted OTU tables

KOALA-formatter

Script for converting raw KO-number output from GhostKOALA and BlastKOALA into hierarchically-structured CSV format

FindMeHemes

Program for identifying and extracting genes with heme-binding motifs from a genome or metagenome/metatranscriptome assembly

ARKTools

Collection of various bioinformatics tools for various things related to sequence analysis, plotting, etc.