AndreaGuarracino/ReferenceGraphPangenomeDataAnalysisHackathon2023

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AndreaGuarracino/ReferenceGraphPangenomeDataAnalysisHackathon2023

AndreaGuarracino

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Material for the Reference Graph Pangenome Data Analysis Hackathon 2023, November 13-17 in Cape Town, South Africa

paf2chain

convert PAF format to CHAIN format

chain2paf

convert CHAIN format to PAF format

WFPOA

An extension to the wavefront algorithm that generalizes it to work on directed acyclic sequence graphs

DataStructuresForBioinformatics

Data Structures for Bioinformatics - LM Bioinformatics - University of Rome Tor Vergata

Jupyter Notebook

1000G-ONT-F100-PGGB

PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium

pafgnostic

rs-spodgi

Line-by-line converter from GFA to RDF (turtle)

HG002_assemblies_assessment

Pangenomic assessment of HG002 assemblies

Jupyter Notebook

maftools