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VCF-kit
VCF-kit: Assorted utilities for the variant call formatIBiS-Bootcamp
cegwas2-nf
GWA mapping with C. elegansGenetic-Analysis
pyPipeline
Andersen Lab Python-based pipeline for variant calling.liftover-utils
Utilities for lifting over genome coordinates in C. elegansCeNDR
CAENDR
CellProfiler
CellProfiler Image Analysis Toolscegwas
Pipeline for performing GWAS mappings with C. elegans phenotype datadry-guide
The Guide to Computing in the Andersen Labandersenlab.github.io
Andersen Lab WebsiteCe-328pop-div
easyXpress
easyXpress is an R package for the analysis and visualization of high-throughput image-based nematode dataCoding_Resources
NemaScan
GWA Mapping and Simulation with C. elegans, C. tropicalis, and C. briggsaeBZRNA-seq-nf
Benzimidazole RNA-Seq and smRNA-Seq Pipelinepost-gatk-nf
Subset isotype-only vcf, build tree etc. steps after variant calling and isotype assignmentcode_club
C.-elegans-Benzimidazole-Resistance-Manuscript
This repo contains all data, scripts, and outputs (figures and tables) associated with this manuscript.protocols
Andersen Lab protocolsNOAA
Integrating NOAA with C.elegans wild isolate datahisat2-pipeline
Pipeline for generating hisat2 referencewormbase-api
impute-nf
bam-toolbox
A bam toolboxnoaa-nf
easyfulcrum
easyfulcrumCe-PopGen
denovo-concordance
De novo concordance pipeline using minihashHawaii_Manuscript
alignment-nf
A nextflow pipeline for genome sequences alignmentTransposons2
microPub_chemotaxis
Data, scripts, and figures for chemotaxis micro publicationchemotaxis-cli
sv-nf
A nextflow pipeline to call structural variants using short or long read datawi-gatk
The new GATK-based pipeline for wild isolate C. elegans strainsannotation-nf
Annotate VCF with snpeff and bcsqGMVK
Gene Model Visualization Tools (GMVT) is a suite of R functions used to visualize gene models and variant annotationsril-nf
Andersen-Knowledge-Base
sfs-dfe
mmp-telseq
Code for analyzing telomere length from million mutations project using telseqDauerSRG3637
Repository for dauf-1 QTL papercellprofiler-nf
A nextflow pipeline to run CellProfiler pipelines on raw images and process outputCePopulationGenetics-nf
archive of Stefan Z. CePopulationGenetics-nf repo with Tim C. editsLove Open Source and this site? Check out how you can help us