AndersenLab/CellProfiler AndersenLab/CellProfiler

  • Stars
    star
    3
  • Rank 3,944,201 (Top 79 %)
  • Language
    Shell
  • Created almost 5 years ago
  • Updated about 3 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
AndersenLab/CellProfiler
github

AndersenLab

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

CellProfiler Image Analysis Tools

More Repositories

1

VCF-kit

VCF-kit: Assorted utilities for the variant call format
Python
120
star
2

IBiS-Bootcamp

Shell
40
star
3

cegwas2-nf

GWA mapping with C. elegans
R
8
star
4

Genetic-Analysis

8
star
5

pyPipeline

Andersen Lab Python-based pipeline for variant calling.
Python
6
star
6

liftover-utils

Utilities for lifting over genome coordinates in C. elegans
Perl
6
star
7

CeNDR

HTML
5
star
8

CAENDR

HTML
4
star
9

cegwas

Pipeline for performing GWAS mappings with C. elegans phenotype data
R
3
star
10

andersenlab.github.io

Andersen Lab Website
HTML
2
star
11

dry-guide

The Guide to Computing in the Andersen Lab
2
star
12

Ce-328pop-div

HTML
2
star
13

HawaiiMS

OpenEdge ABL
2
star
14

easyXpress

easyXpress is an R package for the analysis and visualization of high-throughput image-based nematode data
HTML
2
star
15

Coding_Resources

2
star
16

NemaScan

GWA Mapping and Simulation with C. elegans, C. tropicalis, and C. briggsae
R
2
star
17

BZRNA-seq-nf

Benzimidazole RNA-Seq and smRNA-Seq Pipeline
Python
2
star
18

post-gatk-nf

Subset isotype-only vcf, build tree etc. steps after variant calling and isotype assignment
Nextflow
2
star
19

code_club

HTML
2
star
20

C.-elegans-Benzimidazole-Resistance-Manuscript

This repo contains all data, scripts, and outputs (figures and tables) associated with this manuscript.
R
2
star
21

protocols

Andersen Lab protocols
1
star
22

NOAA

Integrating NOAA with C.elegans wild isolate data
R
1
star
23

hisat2-pipeline

Pipeline for generating hisat2 reference
Shell
1
star
24

wormbase-api

R
1
star
25

impute-nf

Nextflow
1
star
26

bam-toolbox

A bam toolbox
Python
1
star
27

noaa-nf

R
1
star
28

easyfulcrum

easyfulcrum
R
1
star
29

Ce-PopGen

OpenEdge ABL
1
star
30

denovo-concordance

De novo concordance pipeline using minihash
1
star
31

Hawaii_Manuscript

OpenEdge ABL
1
star
32

alignment-nf

A nextflow pipeline for genome sequences alignment
Nextflow
1
star
33

Transposons2

Shell
1
star
34

microPub_chemotaxis

Data, scripts, and figures for chemotaxis micro publication
Python
1
star
35

chemotaxis-cli

R
1
star
36

sv-nf

A nextflow pipeline to call structural variants using short or long read data
Nextflow
1
star
37

wi-gatk

The new GATK-based pipeline for wild isolate C. elegans strains
Nextflow
1
star
38

annotation-nf

Annotate VCF with snpeff and bcsq
Nextflow
1
star
39

GMVK

Gene Model Visualization Tools (GMVT) is a suite of R functions used to visualize gene models and variant annotations
R
1
star
40

ril-nf

R
1
star
41

Andersen-Knowledge-Base

1
star
42

sfs-dfe

R
1
star
43

mmp-telseq

Code for analyzing telomere length from million mutations project using telseq
Python
1
star
44

DauerSRG3637

Repository for dauf-1 QTL paper
1
star
45

cellprofiler-nf

A nextflow pipeline to run CellProfiler pipelines on raw images and process output
Nextflow
1
star
46

CePopulationGenetics-nf

archive of Stefan Z. CePopulationGenetics-nf repo with Tim C. edits
Roff
1
star