AllenCellModeling/diffusive_distinguishability

Stars
3
Rank 3,963,521 (Top 79 %)
Language
Jupyter Notebook
License
Other
Created over 5 years ago
Updated over 3 years ago

AllenCellModeling/diffusive_distinguishability

AllenCellModeling

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Simulation of homogeneous diffusion, bayesian estimation of underlying diffusion constant, and analysis of distinguishability between diffusivity estimates

aicsimageio

Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python

pytorch_fnet

Three dimensional cross-modal image inference

torch_integrated_cell

Jupyter Notebook

pytorch_integrated_cell

Integrated Cell project implemented in pytorch

napari-aicsimageio

Multiple file format reading directly into napari using pure Python

cookiecutter-pypackage

A cookiecutter template to generate a new Python package.

actk

Automated Cell Toolkit

nvidia-docker-stats

Monitor nvidia gpu unit load associated with docker spawned processes

czifile

czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html

Jupyter Notebook

AllenCellModeling.github.io

Jupyter Notebook

DLITE

Let's infer the forces that cells generate during time series by looking at the angles they make with each other.

Jupyter Notebook

napari-annotation-tools

quilt3distribute

People commonly work with tabular datasets, people want to share their data, this makes that easier through Quilt3.

QuiltLoader

Adding custom attributes to quilt nodes

seq2loc

Jupyter Notebook

fish_morphology_code

Basic code and automated workflows to produce analysis friendly data from annotated FISH images

CVAE_testbed

A research testbed on conditional variational autoencoders using Gaussian distributions as input

Jupyter Notebook

aicsimage

Image IO for CZI, OME-TIFF, and PNGs

Jupyter Notebook

brightfield2fish

czi-to-ome-xslt

A repository of XSL transform sheets to map CZI metadata to OME.

aicsimageprocessing

A generalized scientific image processing module from the Allen Institute for Cell Science.

cookiecutter-stepworkflow

AICS Cookiecutter Template for a simple data + code workflow

aics_dask_utils

Utility functions commonly used by AICS projects for interacting with Dask

fish_morphology_manuscript_notebooks

Notebooks for figures in our manuscript

Jupyter Notebook

normal_mode_analysis

Normal mode analysis from meshes

Jupyter Notebook

long-term-eng

Long Term Engineering + Infrastructure Projects

aics-deformation

Tools to use when working on deformation projects.

datasetdatabase

Modeling DB Schema, Creation, and IO

elastic_net_gene_selection

scRNA-seq gene selection code

bioloaders

A repository of dataset objects for common datatypes in bio sciences.

datastep

A base class and utility functions for creating pure functions steps for DAGs.

cyto-dl