• Stars
    star
    1
  • Language
    Python
  • License
    Other
  • Created about 2 years ago
  • Updated 10 months ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

More Repositories

1

aicsimageio

Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
Python
203
star
2

pytorch_fnet

Three dimensional cross-modal image inference
Python
151
star
3

torch_integrated_cell

Jupyter Notebook
45
star
4

pytorch_integrated_cell

Integrated Cell project implemented in pytorch
Python
41
star
5

napari-aicsimageio

Multiple file format reading directly into napari using pure Python
Python
33
star
6

cookiecutter-pypackage

A cookiecutter template to generate a new Python package.
Python
22
star
7

actk

Automated Cell Toolkit
Python
21
star
8

nvidia-docker-stats

Monitor nvidia gpu unit load associated with docker spawned processes
Python
20
star
9

czifile

czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html
Jupyter Notebook
13
star
10

AllenCellModeling.github.io

Data stories
Jupyter Notebook
10
star
11

DLITE

Let's infer the forces that cells generate during time series by looking at the angles they make with each other.
Jupyter Notebook
9
star
12

napari-annotation-tools

Python
5
star
13

quilt3distribute

People commonly work with tabular datasets, people want to share their data, this makes that easier through Quilt3.
Python
4
star
14

QuiltLoader

Adding custom attributes to quilt nodes
Python
4
star
15

diffusive_distinguishability

Simulation of homogeneous diffusion, bayesian estimation of underlying diffusion constant, and analysis of distinguishability between diffusivity estimates
Jupyter Notebook
3
star
16

seq2loc

Jupyter Notebook
3
star
17

fish_morphology_code

Basic code and automated workflows to produce analysis friendly data from annotated FISH images
Python
3
star
18

CVAE_testbed

A research testbed on conditional variational autoencoders using Gaussian distributions as input
Jupyter Notebook
3
star
19

aicsimage

Image IO for CZI, OME-TIFF, and PNGs
Jupyter Notebook
3
star
20

brightfield2fish

Python
2
star
21

czi-to-ome-xslt

A repository of XSL transform sheets to map CZI metadata to OME.
XSLT
2
star
22

aicsimageprocessing

A generalized scientific image processing module from the Allen Institute for Cell Science.
Python
2
star
23

cookiecutter-stepworkflow

AICS Cookiecutter Template for a simple data + code workflow
Python
1
star
24

aics_dask_utils

Utility functions commonly used by AICS projects for interacting with Dask
Python
1
star
25

fish_morphology_manuscript_notebooks

Notebooks for figures in our manuscript
Jupyter Notebook
1
star
26

normal_mode_analysis

Normal mode analysis from meshes
Jupyter Notebook
1
star
27

long-term-eng

Long Term Engineering + Infrastructure Projects
1
star
28

aics-deformation

Tools to use when working on deformation projects.
Python
1
star
29

datasetdatabase

Modeling DB Schema, Creation, and IO
Python
1
star
30

elastic_net_gene_selection

scRNA-seq gene selection code
Python
1
star
31

bioloaders

A repository of dataset objects for common datatypes in bio sciences.
Python
1
star
32

datastep

A base class and utility functions for creating pure functions steps for DAGs.
Python
1
star