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aics-ml-segmentation
aics-segmentation
Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflowcvapipe_analysis
Analysis of data produced by cvapipe for the variance paperaics-shparam
napari-allencell-segmenter
A plugin that enables image segmentation provided by Allen Institute for Cell Sciencesegmenter_model_zoo
scripts and API for running Deep Learning models from segmenterserotiny
Tools for pytorch machine learning pipelinesaics-cytoparam
quilt-data-access-tutorials
A collection of tutorials for accessing allen cell quilt packagesstemcellorganellesizescaling
cytodata-3d-shape-analysis
PairUPWorkshop
Codebase for the PairUP Workshop held at Allen Institute for Cell Sciencecolony-processing
code for 12X colony image processing, dataset creatation and analysisimage_classifier_3d
Python package for 3D image classification using deep neural networkaicsfeature
a central code base for cell feature calculate in different applicationscvapipe
Cell Variance Analysis PipelineEMT_image_analysis
Repository for EMT image analysis codecardio_scrnaseq_paper_code
cytodata-hackathon-base
allencell-segmenter-ml
Napari plugin for ml segmentationEMT_data_analysis
This repo contains code for EMT deliverable data analysis and has dependencies associated with output from EMT_image_analysis repo.Love Open Source and this site? Check out how you can help us