Adamtaranto/Corset-tools Adamtaranto/Corset-tools

  • Stars
    star
    6
  • Rank 2,539,965 (Top 51 %)
  • Language
    Python
  • License
    GNU General Publi...
  • Created over 9 years ago
  • Updated over 4 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
Adamtaranto/Corset-tools
github

Adamtaranto

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Companion scripts for annotation of Corset generated transcript clusters.

More Repositories

1

teloclip

A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
Python
33
star
2

TRF2GFF

Convert Tandem Repeat Finder dat file output into gff3 format
Python
11
star
3

blast-besties

Rapid discovery of reciprocal best blast pairs.
Python
6
star
4

TIRmite

Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.
Python
4
star
5

MITE_Hunter_2

Minor edits to allow MITE_Hunter (Han & Wessler 2010) to use modern blast+
Perl
2
star
6

frisk

Screen genomic scaffolds for regions of unusual k-mer composition.
Python
2
star
7

LTR-Harvest-Reformat

Correct sequence names in LTR_Harvest GFF3 output.
Python
2
star
8

subset-fasta-by-name

Subset, split, and correct formatting of multiple sequence FASTA files.
Python
1
star
9

density-Mapr

An R workflow for creating heat-maps representing the spatial association between two genomic feature sets
Perl
1
star
10

mimeo

Scan genomes for internally repeated sequences, elements which are repetitive in another species, or high-identity HGT candidate regions between species.
Python
1
star
11

HowToScience

A knowledge engine for new students of bioinformatics.
Python
1
star
12

TE-splitter

Extract terminal repeats from retrotransposons (LTRs) or DNA transposons (TIRs). Compose synthetic MITES from complete DNA transposons.
Python
1
star
13

TE-insertion-scanner

Scan whole genome alignments for signatures of transposon insertion.
Python
1
star