AdalbertoCq/Histomorphological-Phenotype-Learning

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Created over 2 years ago
Updated about 1 year ago

AdalbertoCq/Histomorphological-Phenotype-Learning

AdalbertoCq

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Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Quesne J.*, Tsirigos A.*, and Yuan K.* Mapping the landscape of histomorphological cancer phenotypes using self-supervised learning on unlabeled, unannotated pathology slides. 2023'

Deep-Learning-Specialization-Coursera

Deep Learning Specialization courses by Andrew Ng, deeplearning.ai

Jupyter Notebook

Pathology-GAN

Corresponding code of 'Quiros A.C., Murray-Smith R., Yuan K. Pathology GAN: Learning deep representations of cancer tissue. Proceedings of The 3rd International Conference on Medical Imaging with Deep Learning (MIDL) 2020'

Dirichlet_processes

Brief introduction and implementations of related concepts to Dirichlet Processes: GEM distribution, Polya Urn, Chinese restaurant process, Stick-Breaking construction, and Posterior of a DP.

Jupyter Notebook

Deep-Learning-Nanodegree-Udacity

Deep Learning Nanodegree by Udacity.

Jupyter Notebook

NeuralNetwork

Neural Network implementation in Numpy and Keras. Batch Normalization, Dropout, L2 Regularization and Optimizers

Adversarial-learning-of-cancer-tissue-representations

Corresponding code of 'Quiros, A. C., Coudray, N., Yeaton, A., Sunhem, W., Murray-Smith, R., Tsirigos, A., Yuan, K. Adversarial learning of cancer tissue representations. The 24th International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI) 2021'

GANs-Slides-Code-Paper

Tutorial introduction slides to GANs. Code implementations and links of relevant papers.

Learning-a-low-dimensional-manifold-of-realcancer-tissue

Corresponding code of 'Quiros A.C., Murray-Smith R., Yuan K. Learning a low dimensional manifold of real cancer tissue with PathologyGAN 2020'.

Generative-Models

List of papers and code for relevant Generative Models

Jupyter Notebook

Machine-Learning-Coursera-Stanford

Machine Learning of Stanford University/Coursera by Andrew Ng.

Courses-Notes

List of courses related to Mathematics, Statistics, Probability, Optimization and Machine Learning.

Design.and.Implementation.of.a.MIPS.CPU.with.Multicycle.Datapath

TITAN_Xp-CUDA_10.0--Tensorflow_1.12-2018_MacBookPro

Guidelines on how to setup a NVIDIA GEFORCE TITAN Xp, CUDA 10.0 and Tensorflow 1.12 on a 2018 MacBook Pro.

Phenotype-Representation-Learning

Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Quesne J.*, Tsirigos A.*, and Yuan K.* Self-supervised learning unveils morphological clusters behind lung cancer types and prognosis. 2022'

Jupyter Notebook

Reinforcement-Learning-Agents

Deep Deterministic Policy Gradient, Double Deep Q Learning and Deep Q Learning Agents.

Jupyter Notebook