AbdelmajidLh/SNP_density_plot_from_VCF_python

# Author: Abdelmajid EL HOU, Data analyst - France # version 1.0 # date: 25-10-2021 # tested on ubuntu with python3.8 # This python program parse a Variant Call Format (VCF) file and then create a polymorphism density plot from the data extracted from the file. # The program take as input: the file name, window and increment value. # example: python3.8 generate_density_data.py chr02.vsc 1000000 1000 # the output is a png file (plot). # The script and the vcf file should be in the same directory