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pairix
1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinatestibanna
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.hic2cool
Lightweight converter between hic and cool contact matrices.docker-4dn-hic
Docker for 4DN Hi-C processing pipelinefourfront
Data portal for submitting and viewing genomic datapairsqc
QC report generator for Hi-C pairs filereact-workflow-viz
React component for visualizing CWL-like workflows (and similar data)pipelines-cwl
Pipelines developed and used by 4DN-DCIC in Common Workflow LanguageRpairix
R binder for pairix - 2D/1D genomic indexing and querying on bgzipped text filefoursight
Providing insight into your application using AWS infrastructure.4dn-policies
Policies for the NIH Common Fund 4D Nucleome Network.docker-4dn-insulation-scores-and-boundaries-caller
Submit4DN
Developing tools for data submission, curation and controlutils
various util modules shared amongst several projects in our organizationdocker-md5
tibanna_ff
This is an extension of Tibanna that integrates with 4DN/CGAP/SMaHT data portals.bam2pairs
shared-portal-components
Common components for use by 4DN and CGAP portal(s)docker-4dn-RE-checker
GiniQC
Tool for single-cell Hi-C quality controldocker_templates
foursight-core
docker-4dn-cut-and-run-pipeline
CUT&RUN Pipelinedocker-sort-bam
docker-bwa-mem
fish_omics_format
snovault
The SnoVault general purpose hybrid object-relational databasedocker-bam2pairs
docker-dedup-hic
docker-sha256
hicfilters
docker-hicfilters
docker-4dn-repliseq
Docker for 4DN Repli-seq processing pipelinesimple-s3fs
A simple (read-only) FUSE-based file system for S3 buckets.mochee
docker-4dn-compartments-caller
docker-merge-pairs
docker-4dn-mergebed
Docker/CWL for a 4DN util workflow for merging and sorting gzipped bed filesLove Open Source and this site? Check out how you can help us