Hach Lab for Computational Cancer Genomics (@vpc-ccg)
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vpc-ccg

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  • Stars
    star
    263
  • Global Org. Rank 34,808 (Top 12 %)
  • Registered almost 8 years ago
  • Most used languages
    C++
         66.7 %
    Python
         16.7 %
    HTML
         8.3 %
    C
         8.3 %
  • Location 🇨🇦 Canada
  • Country Total Rank 3,017
  • Country Ranking
    C++
         232
    HTML
         368
    C
         471
    Python
         2,398

Top repositories

1

haslr

A fast tool for hybrid genome assembly of long and short reads
C++
75
star
2

lordfast

Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.
C
41
star
3

calib

Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.
HTML
38
star
4

sedef

Identification of segmental duplications in the genome
C++
26
star
5

svict

Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA
C++
25
star
6

freddie

Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing
Python
17
star
7

scTagger

10x single cell short- and long-read RNA sequencing
Python
11
star
8

circminer

A sensitive and fast tool for circular RNA detection from RNA-Seq data
C++
10
star
9

pamir

Discovery and Genotyping of Novel Sequence Insertions in Many Sequenced Individuals
C++
8
star
10

genion

GENe fusION
C++
7
star
11

tksm

Very modular, very cool long-read transcriptomic simulator
C++
5
star
12

util-progressbar

C++
1
star