Virtool (@virtool)
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virtool

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Top repositories

1

virtool

Viral infection diagnostics using next-generation sequencing
Python
43
star
2

virtool-ui

The browser frontend for Virtool
TypeScript
4
star
3

virtool-website

The Virtool product website
Sass
4
star
4

workflow-pathoscope

A workflow for detecting known viruses in Virtool
Python
3
star
5

virtool-core

Core utilities for Virtool and associated packages
Python
3
star
6

virtool-workflow

A framework for building Virtool workflows
Python
3
star
7

dev

Developer tooling for Virtool.
Python
2
star
8

pyfixtures

Pytest style fixtures outside of Pytest
Python
2
star
9

virtool.ca

The new website for Virtool
MDX
2
star
10

compose

Python
2
star
11

workflow-nuvs

A workflow for identifying novel viruses in Virtool
Python
2
star
12

ref-builder

Build and maintain reference sets of pathogen genome sequences.
Python
2
star
13

virtool-hmm

Profile HMMs and annotations for Virtool and NuVs
Python
2
star
14

virtool-maintenance

CSS
1
star
15

virtool-contrib-guide

1
star
16

ref-plant-viruses

An official Virtool reference for plant viruses
1
star
17

virtool-ws

Websocket service for Virtool
Python
1
star
18

virtool-cli

A command line interface for working with Virtool data
Python
1
star
19

workflow-create-sample

A workflow for creating Virtool samples
Python
1
star
20

hmm-viruses

HMM data for predicting novel viruses
1
star
21

virtool-migration

Alembic migrations for Virtool
Python
1
star
22

workflow-iimi

A workflow for detecting known viruses using ML in Virtool
HTML
1
star
23

ml-plant-viruses

A machine learning model for detecting plant viruses.
1
star
24

workflow-create-subtraction

A workflow for creating Virtool subtractions
Python
1
star
25

external-tools

Dockerfile
1
star
26

workflow-build-index

A workflow for building Virtool reference indexes
Python
1
star
27

workflow-tools

A Docker image with bioinformatics tools used by virtool-workflow
Dockerfile
1
star
28

virtool-database

An official virus reference database for Virtool
Python
1
star
29

virtool-operator

A Helm chart and Kubernetes operator for keeping Virtool updated without downtime.
Go
1
star