Explore @vanheeringen-lab Open Source projects

@vanheeringen-lab

vanheeringen-lab

Stars
715
Global Org. Rank 19,145 (Top 7 %)
Registered about 6 years ago
Most used languages

Python
63.6 %

Jupyter Notebook
27.3 %

R
9.1 %
Location 🇳🇱 Netherlands
Country Total Rank 848
Country Ranking

Python
127

Jupyter Notebook
268

R
545

genomepy

genes and genomes at your fingertips

seq2science

Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.

gimmemotifs

Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed installation instructions and usage examples.

ANANSE

Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed installation instructions and usage examples.

scepia

Single Cell Epigenome-based Inference of Activity

Jupyter Notebook

psap

CLI interface for the PSAP classifier. PSAP implements a RandomForest approach to predict the probability of proteins to mediate protein phase separation (PPS)

Transcriptional_Burst_Kinetics

cfb_book

Textbook for the Computation for Biologists course @ Radboud University

Jupyter Notebook

anansnake

Automate long-running ANANSE analyses with snakemake

gimme-analysis

Jupyter Notebook

learnr.proto