@vanheeringen-lab
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Top repositories

1

genomepy

genes and genomes at your fingertips
Python
360
star
2

seq2science

Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
Python
152
star
3

gimmemotifs

Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed installation instructions and usage examples.
Python
107
star
4

ANANSE

Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed installation instructions and usage examples.
Python
77
star
5

scepia

Single Cell Epigenome-based Inference of Activity
Jupyter Notebook
19
star
6

psap

CLI interface for the PSAP classifier. PSAP implements a RandomForest approach to predict the probability of proteins to mediate protein phase separation (PPS)
Python
4
star
7

Transcriptional_Burst_Kinetics

Python
3
star
8

cfb_book

Textbook for the Computation for Biologists course @ Radboud University
Jupyter Notebook
2
star
9

anansnake

Automate long-running ANANSE analyses with snakemake
Python
1
star
10

gimme-analysis

Jupyter Notebook
1
star
11

learnr.proto

R
1
star