Centre for Computational Inference in Evolutionary Life Science (@uio-cels)
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Top repositories

1

NucDiff

In-depth characterization and annotation of differences between two sets of DNA sequences
Python
54
star
2

genomicgraphcoords

Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes
Python
11
star
3

OffsetBasedGraph

Python package for handling genomic offset-based graphs
Python
3
star
4

Repeats

Pipeline for detecting repetetive elements in genomes.
Shell
2
star
5

teleost-repeats

Repo for "Genomic repeat landscape evolution across the teleost fish lineages" (Reinar et al. 2019)
R
1
star
6

gendatafetcher

A small set of utility functions for using the UCSC mysql database and sequence API, focused around getting data relevant for graph-based genomes.
Python
1
star
7

Solbakken_RNAseq

Data related to Solbakken et al 2019, infection and vaccination of Atlantic cod
1
star
8

TandemRepeats

Jupyter Notebook
1
star