UC Davis Bioinformatics Core (@ucdavis-bioinformatics)
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ucdavis-bioinformatics

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  • Stars
    star
    118
  • Global Org. Rank 53,021 (Top 17 %)
  • Registered about 14 years ago
  • Most used languages
    Python
         50.0 %
    R
         33.3 %
    Perl
         16.7 %
  • Location πŸ‡ΊπŸ‡Έ United States
  • Country Total Rank 40,402
  • Country Ranking
    Perl
         642
    R
         2,119

Top repositories

1

proc10xG

processing 10x genomics reads
Python
23
star
2

assemblathon2-analysis

collection of scripts and commands used by Ian Korf, Keith Bradnam, and Joe Fass in the analysis of Assemblathon 2 entries (assemblies)
Perl
21
star
3

scRNA_shiny

scRNA-seq Shiny App
R
11
star
4

RnaVis

Shiny application to Visualize RNAseq data
R
2
star
5

PacBio_GenomeStats

Given a set of Pac Bio cells, generate fofn needed for assembly and statistics
Python
2
star
6

NeuroMabSeq

A place to track issues for NeuroMabSeq project
2
star
7

biocore-tools

Collection of scripts and tools used within the UC Davis Bioinformatics Core
Python
1
star
8

HTStream_reports

R reports based on JSON HTStream ouptut
1
star
9

scRNAseq_Analysis_Workflow

multipart analysis workflow in R for scRNAseq
1
star
10

PBcR-testing

framework for testing various strategies related to correction of PacBio reads (via Illumina reads) and subsequent use in assembly
1
star