Explore @theLongLab Open Source projects

The Long Lab (@theLongLab)

theLongLab

Stars
26
Global Org. Rank 106,210 (Top 34 %)
Registered over 6 years ago
Most used languages

Java
33.3 %

R
33.3 %

Python
16.7 %

Jupyter Notebook
8.3 %

Cuda 8.3 %
Location 🇨🇦 Canada
Country Total Rank 12,848
Country Ranking

Cuda 25

R
269

Java
1,375

Jupyter Notebook
2,408

Python
7,644

CATE

A fast and scalable CUDA implementation to conduct highly parallelized evolutionary tests on large scale genomic data.

TF-TWAS

Jawamix5

PoolHapX

transTF-TWAS

bert_based_auto_coding

Using discharge summary determine whether the patient has pressure ulcer by a hierarchical attention Bert

Jupyter Notebook

AE-TWAS

kTWAS

TransCOVID

A dedicated pipeline designed for the inference of COVID19 transmission networks in a population complete with the prediction of unsampled sources of infection using SARS-CoV-2 genomic sequences. Our pipeline is built upon the BEAST2 and TransPhylo software.

PoolHapX-old

seqmodel

Genomic representation learning framework

OCMA

OCMA: Out-of-Core Matrices Analyzer

Transmission_Analyzer

A pipeline that enables the prediction of HIV transmission and Infection date inference. The provided R code can be utilised to analyse a BEAST2 generated MCC tree to predict novel transmission clusters as well as Infection dates of patients using Sanger seqeuncing data.