Institute of Medical Systems Biology, Ulm University (@sysbio-bioinf)
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sysbio-bioinf

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Top repositories

1

avatar

Software for Analysis and Visualization of Alteration data
Clojure
8
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2

sputnik

Clojure library for parallelization of computations to distributed computation nodes.
Clojure
7
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3

McKmeans

A multi-core parallel implementation of the k-means cluster algorithm written in Clojure.
Clojure
6
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4

ProbRules

A language for rule-based modeling built on top of ProbLog, a probabilistic Prolog.
Prolog
3
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5

VennMaster

VennMaster: A tool for drawing area proportional Venn diagrams
Java
3
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6

CoCoV

CoCoV App for tracking adverse events after COVID vaccination
JavaScript
3
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7

BNStatic

Prediction of dynamic impact nodes based on graph-based measures
R
2
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8

HSC-boolean-network-model

R Scripts to simulate the Boolean network model of the HSC
R
1
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9

BarcodesDesigner

Barcodes Designer: A toolkit for the design and optimization of barcode sets for Next Generation Sequencing libraries.
Java
1
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10

QuantumAttractorSearch

Jupyter notebook for running an attractor search in Boolean Networks using quantum computers
Jupyter Notebook
1
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11

TraqBio

Flexible progress tracking for core unit projects
Clojure
1
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12

CTest

CTest: an online system to track COVID-19 test results
Clojure
1
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13

yap-problog

Docker for YAP version of Problog
1
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14

MOCCA

Multi-objective selection for collecting cluster alternatives
R
1
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15

GatekeepR

R Shiny application for fast intervention target screening in Boolean networks
R
1
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16

PanNET

Source code for the pancreatic neuroendocrine tumor model
R
1
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17

Cantata

Code and Demo sources for CANTATA - inference of missing interactions in Boolean Networks
C++
1
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18

DynamicDriverSets

Scripts and demo for identifying dynamic driver sets to control phenotypical landscapes
R
1
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19

IdeogramBrowser

Java
1
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