Steinegger Lab (@steineggerlab)
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Top repositories

1

foldseek

Foldseek enables fast and sensitive comparisons of large structure sets.
C
635
star
2

foldcomp

Compressing protein structures effectively with torsion angles
C++
142
star
3

conterminator

Detection of incorrectly labeled sequences across kingdoms
C
71
star
4

Metabuli

Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
C++
61
star
5

petasearch

🧬 Efficient parallelized peta-scale protein database search
C
42
star
6

ufcg

UFCG: Universal Fungal Core Genes
Java
26
star
7

foldseek-analysis

Scripts to benchmark and train foldseek
Jupyter Notebook
19
star
8

colabfold-protocol

ColabFold protocol
Jupyter Notebook
18
star
9

foldmason

C
13
star
10

afdb-clusters-analysis

Scripts to generate and analyze afdb clusters
Jupyter Notebook
7
star
11

probeit

Design capture probes
Python
7
star
12

unicore

Universal and efficient core gene phylogeny with Foldseek and ProstT5
Python
5
star
13

SeekRank

Rank homologous protein sequences based on a regressor trained on experimental measures
Jupyter Notebook
4
star
14

afdb-clusters-web

Jupyter Notebook
2
star
15

foldcomp-analysis

C
2
star
16

foldseek-regression

Regression test for foldseek
Shell
2
star
17

ufcg-web

UFCG website
HTML
1
star