Steinegger Lab (@steineggerlab)
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Top repositories

1

foldseek

Foldseek enables fast and sensitive comparisons of large structure sets.
C
789
star
2

foldcomp

Compressing protein structures effectively with torsion angles
C++
155
star
3

foldmason

Multiple Protein Structure Alignment at Scale with FoldMason
C
109
star
4

Metabuli

Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
C++
107
star
5

conterminator

Detection of incorrectly labeled sequences across kingdoms
C
77
star
6

petasearch

🧬 Efficient parallelized peta-scale protein database search
C
42
star
7

ufcg

UFCG: Universal Fungal Core Genes
Java
31
star
8

foldseek-analysis

Scripts to benchmark and train foldseek
Jupyter Notebook
26
star
9

colabfold-protocol

ColabFold protocol
Jupyter Notebook
22
star
10

unicore

Universal and efficient core gene phylogeny with Foldseek and ProstT5
Rust
8
star
11

afdb-clusters-analysis

Scripts to generate and analyze afdb clusters
Jupyter Notebook
8
star
12

probeit

Design capture probes
Python
8
star
13

SeekRank

Rank homologous protein sequences based on a regressor trained on experimental measures
Jupyter Notebook
6
star
14

Metabuli-App

HTML
4
star
15

afdb-clusters-web

Jupyter Notebook
2
star
16

foldcomp-analysis

C
2
star
17

foldseek-regression

Regression test for foldseek
Shell
2
star
18

ufcg-web

UFCG website
HTML
1
star
19

foldseek-multimer-analysis

Python
1
star
20

foldmason-analysis

Shell
1
star