L.M. Smith Group (@smith-chem-wisc)
Guthub

smith-chem-wisc

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  • Stars
    star
    164
  • Global Org. Rank 44,904 (Top 15 %)
  • Registered almost 9 years ago
  • Most used languages
    C#
         76.9 %
    Python
         15.4 %
    HTML
         7.7 %
  • Location 🇺🇸 United States
  • Country Total Rank 32,945
  • Country Ranking
    C#
         1,120
    HTML
         9,626

Top repositories

1

MetaMorpheus

Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities
C#
90
star
2

mzLib

Library for mass spectrometry projects
C#
26
star
3

FlashLFQ

Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics
C#
19
star
4

ProteoformSuite

Construction, quantification, and visualization of proteoform families
C#
11
star
5

MetaNetwork

HTML
9
star
6

Spritz

Software for RNA-Seq analysis to create sample-specific proteoform databases from RNA-Seq data
C#
6
star
7

gptmd

Use open search results (from Morpheus) to create a database with uncovered candidate PTM annotations
Python
3
star
8

ProteaseGuru

C#
2
star
9

SnpEff

This is a customized version of SnpEff used in Spritz (https://github.com/smith-chem-wisc/Spritz), which outputs a protein FASTA and XML files that can be used in MS proteomic search software.
Java
2
star
10

GeneProtXML

Creating a gene-centric proteomics database for proteogenomic studies.
C#
1
star
11

SampleSpecificDBGenerator

Generates custom UniProt-XML databases from RNA-Seq data
Python
1
star
12

ProteoformClassifier

Classifies proteoform identifications and validates that input is transparent about ambiguity
C#
1
star
13

Proteogenomics

C# implementation of classes and functions for proteogenomics
C#
1
star
14

AppleTurnover

Application for Elucidating Turnover Rates
C#
1
star