SING Group (@sing-group)
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Top repositories

1

deep-learning-colonoscopy

Review in Deep Learning for Polyp Detection and Classification in Colonoscopy (https://doi.org/10.1016/j.neucom.2020.02.123).
167
star
2

GC4S

GUI Components for (Java) Swing
Java
35
star
3

biojs-vis-blasterjs

BlasterJS - an open source JS library to display Blast results
JavaScript
19
star
4

ALTER

ALignment Transformation EnviRonment
Java
11
star
5

aibench-project

The SING Java Framework for Scientific Apps
Java
11
star
6

compi

Java Framework for Computational Pipelines
Java
9
star
7

bdp4j

Big Data Pipelining For Java
Java
8
star
8

my-brain-seq

myBrain-Seq: a Compi pipeline for miRNA-Seq data analysis in neuropsychiatry
R
8
star
9

bicycle

bicycle (bisulfite-based methylcytosine caller) is a next-generation sequencing bioinformatics pipeline able to perform a full DNA methylation level analysis
Java
8
star
10

public-datasets-to-voc

Scripts for converting public polyp datasets to the PASCAL VOC format.
Python
7
star
11

pandrugs-docker

A Dockerfile to generate an all-in-one pandrugs server
Shell
7
star
12

seda

SEquence DAtaset builder
Java
5
star
13

pandrugs-backend

A Java backend for the PanDrugs application
Java
3
star
14

mass-spectrometry-peak-matching

R implementation of the "Forward" peak matching algorithm implemented in Mass-Up (https://www.sing-group.org/mass-up/, https://doi.org/10.1186/s12859-015-0752-4)
R
3
star
15

pandrugs-frontend

An AngularJS frontend for the PanDrugs application
HTML
3
star
16

dewe

DEWE (Differential Expression Workflow Executor) is an open source application for easily executing Differential Expression analyses in RNA-Seq data.
Java
3
star
17

la-images

LA-iMageS: a software for elemental distribution bioimaging using LA-ICP-MS data
Java
2
star
18

BDBM

BLAST DataBase Manager
Java
2
star
19

S2P

S2P is an open source application for fast and easy processing of 2D-gel and MALDI-based mass spectrometry protein data.
HTML
2
star
20

DiscoverRegex

Automatic Generator of Regular Expressions.
C
2
star
21

polydeep-object-detection

Python
2
star
22

livia-core

LIve VIdeo Analysis framework (core)
Python
1
star
23

livia-ui

LIve VIdeo Analysis framework (UI)
Python
1
star
24

java-phylogenetic-tree-collapser

A Java program to collapse phylogenetic trees in Newick format.
Java
1
star
25

seda-compi-pipelines

This project provides a framework for easily creating pipelines of SEDA commands using Compi.
Shell
1
star
26

r-rsc-statistics-data-mining

Source code for the book chapter about Statistics, Data Mining and Modeling.
R
1
star
27

Markyt

Markyt is a Web-based multi-purpose annotation tool.
PHP
1
star
28

piba-frontend

Polyp Image BAnk (Frontend)
TypeScript
1
star
29

warcrepository

WarcRepository software
PHP
1
star
30

master-bioinformatica-aplicada-2020-2021

Machine Learning in Bioinformatics class at the "Máster en Bioinformática Aplicada a Medicina Personalizada y Salud (Curso 2020-2021)"
Jupyter Notebook
1
star
31

BEW

Public repository for Biofilmfs Experiment Workbench (BEW).
Java
1
star
32

master-bioinformatica-aplicada-2022-2023

Machine Learning in Bioinformatics class at the "Máster en Bioinformática Aplicada a Medicina Personalizada y Salud (Curso 2022-2023)"
Jupyter Notebook
1
star
33

master-bioinformatica-aplicada-2023-2024

Machine Learning in Bioinformatics class at the "Máster en Bioinformática Aplicada a Medicina Personalizada y Salud (Curso 2023-2024)
Jupyter Notebook
1
star