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San Diego Supercomputer Center (@sdsc)

sdsc

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p3dfft

P3DFFT stands for Parallel Three-Dimensional Fast Fourier Transforms. It is a library for large-scale computer simulations on parallel platforms. It implements 3D FFT and related algorithms such as Chebyshev transform (an important class of algorithm for simulations in a wide range of fields). P3DFFT uses 2D, or pencil, decomposition. For more information:

lustre-data-mover

p3dfft.3

P3DFFT++ (a.k.a. P3DFFT v. 3) is a new generation of P3DFFT library that aims to provide a comprehensive framework for simulating multiscale phenomena. It takes the essence of P3DFFT further by creating an extensible, modular structure uniquely adaptable to a greater range of use cases. The users can specify in detail what kind of data layout they would like to use, both in terms of local memory ordering and the processor layout. Just like P3DFFT, P3DFFT++ is a distributed software package, using MPI as the primary method for interprocessor commubnication. It supports 1D, 2D and 3D (to come soon) domain decomposition schemes. As P3DFFT, P3DFFT++ also relies on lower-level libraries, for example FFTW to perform optimized 1D FFTs. Unlike P3DFFT, which was written in Fortran90, P3DFFT++ is written in C++. Interfaces are provided for C and Fortran. To learn about using the code the user is encouraged to study example programs in C++, C and FORTRAN subdirectories. Please e-mail Dmitry Pekurovsky ([email protected]) for any questions or suggestions. Software contributions are welcome, assuming they follow the main ideas of the framework.

sdsc-summer-institute-2019

SDSC Summer Institute 2019 material

sdsc-summer-institute-2017

SDSC Summer Institute 2017 teaching material

sdsc-summer-institute-2022

SDSC Summer Institute 2022 material

Jupyter Notebook

blktrace

This repository is a mirror of git://git.kernel.dk/blktrace.git

sdsc-summer-institute-2018

SDSC Summer Institute 2018 Teaching Material

sdsc-summer-institute-2021

San Diego Supercomputer Center Summer Institute

Jupyter Notebook

sdsc-summer-institute-2016

San Diego Supercomputer Center Summer Institute 2016

sdsc-summer-institute-2024

Repository for the HPC & Data Science Summer Institute 2024

Jupyter Notebook

sandbox-cluster-guide

Guide to creating Raspberry Pi clusters

sdsc-summer-institute-2023

Jupyter Notebook

sdsc-summer-institute-2020

SDSC Summer Institute 2020 material

cluster-guide

Documentation on building a Rocks Cluster

sdsc-user

Files for HPC users at SDSC

drive-data-roll

SDSC drive-data roll

gamess-roll

SDSC gamess roll

pdm

sandbox-pong

Code examples from the SDSC Sandbox

gordon

Gordon-related items

seedmelab

A branded scientific data management system for your project or lab.

user-docs

User Guides for SDSC's National Systems

matlab-roll

SDSD matlab roll

mpi-roll

hadoop-roll

SDSC hadoop roll

itss-financial

Financial dashboard for bounce tickets and recharge statements

incidenterator

Incident response management tool

cpmd-roll

math-roll

scipy-roll

SDSC scipy roll

xsede-xdusage

XSEDE xdusage script

vmd-roll

gnucompiler-roll

Triton gnu compiler roll

atlas-roll

Triton atlas roll

octave-roll

SDSC octave roll

chemistry-roll

SDSC chemistry roll

sdsc-roll

user_map_oa4mp

A user-mapping plugin for Open OnDemand that interoperates with oa4mp CAs

biotools-roll

SDSC biotools roll

mpiblast-roll

SDSC mpiblast roll

boost-roll

SDSC boost roll

mlnx-ofed-roll

SDSC mlnx-ofed roll

pgi-roll

hdf-roll

mpi4py-roll

SDSC mpi4py roll

netcdf-roll

SDSC netcdf roll

python-roll

SDSC python roll

jupyternotebook-reverseproxy

Repository to hold code for the reverse proxy service

intelmpi-roll

SDSC intelmpi roll

R-roll

lightning-tutorials-sc16

San Diego Supercomputer Center Lightning tutorials @ Supercomputing 2016

Jupyter Notebook

sdsc-summer-institute-2015

cern-roll

website-summer-institute-2019

itss-srv

gnutools-roll

Triton gnu roll

nsg-developer-env