Explore @scilus Open Source projects

Sherbrooke Connectivity Imaging Lab (@scilus)

scilus

Stars
196
Global Org. Rank 40,514 (Top 13 %)
Registered over 11 years ago
Most used languages

Nextflow 40.0 %

Python
20.0 %

Dockerfile
12.0 %

C
8.0 %

Shell
8.0 %

C++
8.0 %

JavaScript
4.0 %
Location 🇨🇦 Canada
Country Total Rank 3,711
Country Ranking

Nextflow 1

Dockerfile
110

C++
610

Python
1,298

C
1,522

Shell
1,937

JavaScript
5,104

scilpy

The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox

tractoflow

TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity

fibernavigator

The original Fibernavigator: tool for vizualization of DTI and MRI data

ismrm_2015_tractography_challenge_scoring

Scripts used to recreate the results of the ISMRM 2015 Tractography Challenge

dmri-explorer

A real-time diffusion MRI viewer for Linux and Windows using OpenGL 4.6.

dmriqcpy

Diffusion MRI Quality Check in python

containers-tractoflow

Files needed to build a Singularity container to run the TractoFlow pipeline

FiberCompression

A tool for tractography streamlines compression

dmriqc_flow

A Nextflow pipeline for diffusion MRI quality check

docker-vtk-8.2.0

Docker for VTK 8.2.0 with Mesa for offscreen rendering

scil-documentation

Documentation for the SCIL

rbx_flow

general-utils

General utilities and scripts used in the lab.

connectoflow

extractor_flow

freewater_flow

tractoflow-ABS

TractoFlow Atlas Based Segmentation

quactography

containers-dmriqc

Docker container for Diffusion MRI Quality Check

register_flow

disco_challenge

nf-scil

SCIL Nextflow Toolbox

cave-fibers

A project to bring Fiber tractography visualization and interaction to the University of Sherbrooke's CAVE

containers-scilus

Files needed to build a container to run all scilus flows.

registration_flow

Nextflow pipeline to register Nifti and Trk in a common space