@satijalab
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satijalab

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  • Stars
    star
    3,137
  • Global Org. Rank 6,761 (Top 3 %)
  • Followers 249
  • Registered over 10 years ago
  • Most used languages
    R
         64.3 %
    HTML
         14.3 %
    Rust
         7.1 %
    Jupyter Notebook
         7.1 %
    Dockerfile
         7.1 %

Top repositories

1

seurat

R toolkit for single cell genomics
R
2,280
star
2

seurat-wrappers

Community-provided extensions to Seurat
R
303
star
3

sctransform

R package for modeling single cell UMI expression data using regularized negative binomial regression
R
208
star
4

seurat-data

Dataset distribution for Seurat
R
129
star
5

azimuth

A Shiny web app for mapping datasets using Seurat v4
HTML
108
star
6

scChromHMM

🧬 πŸ¦€ A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.
Rust
24
star
7

seurat-object

R
23
star
8

azimuth-references

R
19
star
9

Integration2019

R
16
star
10

PASTA

R
14
star
11

seurat-docker

Docker images of Seurat
Dockerfile
8
star
12

lung-ccf

Central repo to deposit code for lung CCF project
Jupyter Notebook
2
star
13

azimuth-meta-analysis

R
2
star
14

azimuth_website

HTML
1
star