Explore @royerlab Open Source projects

Royer Lab at CZB SF (@royerlab)

royerlab

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Location 🇺🇸 United States
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napari-chatgpt

A napari plugin to process and analyse images with chatGPT!

napari-segment-anything

Segment Anything Model (SAM) native Qt UI

aydin

Aydin — User-friendly, Fast, Self-Supervised Image Denoising for All.

ultrack

Cell tracking and segmentation software

cytoself

Self-supervised models for encoding protein localization patterns from microscopy images

dexp

Dataset EXploration & Processing

ssi-code

Image Deconvolution via Noise-Tolerant Self-Supervised Inversion

daxi

High-Resolution, Large Field-of-View, and Multi-ViewSingle Objective Light-Sheet Microscopy

pipython

PIPython is a collection of Python modules to access a PI device and process GCS data.

slurmkit

Simple SLURM python API

in-silico-fate-mapping

zebrahub-paper-umap-3d

Generate 3D UMAPs of zebrafish

arbol

arbol - Arborescent Printouts in Python

ZAF

ZAF(Zebrafish Automated Feeder): Software needed for automated fish feeding system of our fish facility

napari-umap

czpeedy

A tool for experimentally determining the best tensorstore spec for a given machine and dataset.

ultrack-i2k2023

Ultrack https://github.com/royerlab/ultrack from Images to Knowledge - 2023 workshop

Jupyter Notebook

opensimview

New ClearControl + Dorado +.... combined repo

zebrahub-protocols

dmp40j

Wrapper around Thorlabs DMP40 deformable mirror API

dexpv2

easyscopy

Fiji plugin for microscope control scripting

aptj

APTJ - Java bindings for Thorlabs' APT library

napari-aydin

pysimbryo

Python bindings for Simbryo

zebrahub-napari-animation

Zebrahub's napari-animation demo