Explore @rothlab Open Source projects

Roth Laboratory (@rothlab)

rothlab

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chromozoom

ChromoZoom is a fast, fluid web-based genome browser

tileseqMave

The RothLab TileSeq analysis pipeline for MAVE

pacybara

A pacbio barcode clustering and barseq pipeline

mave-gene-prioritization

R script to 1) Extract missense variants that had been observed in "clinical testing" (as opposed to "literature only") in ClinVar. 2) Calculating movability and reappearance parameters using the aggregated and capped Invitae variant counts. 3) Apply the movability and reappearance parameters to ClinVar genes, calculating their movability- and reappearance-weighted impact score (MARWIS), as well as their difficulty-adjusted impact score (DAIS). 4) Rank ClinVar genes.

clusterUtil

utility scripts for HPC cluster usage

variant-effect-predictor-assessment

burden-test-public

tileseq_package

DMS Tileseq sequence analysis pipeline

mavequest-front-end

The frontend service of MaveQuest, a web resource to explore potential assays, phenotypes and clinical interests for human gene variants.