Explore @rnajena Open Source projects

RNA Bioinformatics and Highthroughput Analysis Jena (@rnajena)

rnajena

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bertax

Taxonomic classification of DNA sequences

poseidon

PoSeiDon: positive selection detection and recombination analysis pipeline

vidhop

VIDHOP is a virus host predicting tool. Its able to predict influenza A virus, rabies lyssavirus and rotavirus A.

EpiDope

Prediction of B-cell epitopes from amino acid sequences using deep neural networks.

viralclust

Small pipeline to cluster viral genomes based on their k-mer content. WiP

read5

Wrapper to read fast5, slow5, blow5 and pod5 files.

bertax_training

Training scripts for BERTax

magnipore

Magnipore: Differential single nucleotide changes of ONT signals

vegeta

work in progress

epitop_pred

scripts needed to generate a model which predicts epitops

RNAswarm

RNAswarm is a nextflow pipeline for differential RNA-RNA interaction analysis using RNA cross-linking methodologies

pcago-unified

PCAGO is an interactive web service that allows analysis of RNA-Seq read count data with principal component analysis (PCA) and agglomerative clustering. The tool also includes features like read count normalization, filtering read counts by gene annotation and various visualization options.

Nanopore_Seq_Metaanalysis

sugar

S*R -- A Python framework for bioinformatics