Rivas Lab (@rivas-lab)
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rivas-lab

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Top repositories

1

covid19

As a part of COVID-19 Host Genetics Initiative, we perform the following set of analyses to better understand the genetic basis of COVID-19 susceptibility and severity.
Jupyter Notebook
42
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2

public-resources

Repository for resources we'd like to share with the community.
Jupyter Notebook
24
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3

snpnet

snpnet - Efficient Lasso Solver for Large-scale genetic variant data
R
18
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4

ukbb-tools

Tools for preprocessing, QC, and preliminary analyses from raw UK BioBank data
Jupyter Notebook
7
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5

mvpmm

MultiVariate Polygenic Mixture Model
R
6
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6

Smiles2Dock

Smiles2Dock: an open large-scale multi-task dataset for ML-based molecular docking
Python
6
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7

FasTag

FasTag: automatic text classification of unstructured medical narratives
Jupyter Notebook
5
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8

GlobalBiobankEngine

A resource for the visualization and exploration of genetic and phenotypic data from biobanks
HTML
4
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9

semm

Sex Effects Mixture Model for GWAS summary statistics
C++
4
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10

multisnpnet-Cox

Multiresponse time-to-event Cox proportional hazards model - CPU
R
4
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11

mrp

Repo for MRP method.
Python
3
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12

multisnpnet-Cox_gpu

Multiresponse time-to-event Cox proportional hazards model - GPU
C++
2
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13

mrpmm

Repo for MRPMM method
Python
2
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14

biomarkers

Jupyter Notebook
2
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15

sex-diff-biomarker-genetics

Bayesian Mixture Models for identifying sex-specific variants in UKBB data.
Jupyter Notebook
2
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16

presentations

HTML
1
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17

stratified_MR

Codebase for Wainberg et al. PLOS Med 2019 (doi.org/10.1371/journal.pmed.1002982)
Python
1
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18

AncestryOmicsUKB

Using Pre-training and Interaction Modeling for ancestry-specific disease prediction using multiomics data from the UK Biobank
R
1
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19

presentations-readings

Repository for lab presentations (abstracts, posters, talks) and readings.
Jupyter Notebook
1
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20

multisnpnet-Cox-tv

Cox models for time-varying covariate in large population-cohorts
Jupyter Notebook
1
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21

degas-risk

Polygenic risk modeling with latent trait-related genetic components
Jupyter Notebook
1
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