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@reimandlab

reimandlab

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Registered over 8 years ago
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ActivePathways

Integrative pathway enrichment analysis of multivariate omics data

ActiveDriverDB

ActiveDriverWGSR

ActiveDriverWGSR is an R package for discovery of cancer driver genes and non-coding elements in whole genome sequencing data

DPM_publication_code

DPM: code and input files for the publication

lncRNAs_TCGA

Code I have used throughout my Masters analyzing TCGA clinical and RNA-Seq datasets to discover lncRNA prognostic markers

needleplot

Another needleplot for mutation data, used by ActiveDriverDB

CA2M_v2

CA2M: chromatin accessibility and mutations in cancer genomes

shiny-web-form

A web form created as a shiny app for literature analysis

RM2

Regression Models for Localised Mutations

CNNClassifier

Convolutional Neural Net for Sequence Classification

CA2M

Chromatin accessibility of primary human cancers ties regional mutational processes with tissues of origin (repository for paper)