ReaDDy (@readdy)
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readdy

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Top repositories

1

readdy

Python / C++ based particle reaction-diffusion simulator
C++
51
star
2

readdy_java

This library allows to do particle-based reaction-diffusion simulations.
Java
11
star
3

readdy_learn

learn reactions from data
Jupyter Notebook
9
star
4

graph

Small C++ header-only library containing a graph data structure with flexible vertices
C++
4
star
5

h5rd

lightweight hdf5 wrapper
C++
4
star
6

readdyviewer

C++
3
star
7

readdy-sim-StarterKit

This starter kit contains templates and necessary binaries to start simulating right away.
Shell
3
star
8

readdy_documentation

Jekyll source for documentation
SCSS
3
star
9

readdy_tutorials

Example notebooks to demonstrate the usage of readdy
Jupyter Notebook
2
star
10

readdy-input-topology-generator

The readdy-input-topology-generator (Topology Generator) creates input topology files for particles and groups, given a file how many particle and how many groups are desired and on which geometry (i.e. potentials) these particles/groups should reside.
Java
2
star
11

readdy-VMD-visualizer

This tool parses ReaDDy output trajectories and creates an VMD readable output and a VMD .tcl script to visualize it.
Java
1
star
12

readdy.github.io

ReaDDy documentation
HTML
1
star