Systems Biology of Gene Regulatory Elements (N. Rajewsky lab) (@rajewsky-lab)
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rajewsky-lab

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Top repositories

1

mirdeep2

Discovering known and novel miRNAs from small RNA sequencing data
Perl
134
star
2

novosparc

Jupyter Notebook
125
star
3

openst

Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab
HTML
77
star
4

spacemake

Python
37
star
5

planarian_lineages

Jupyter Notebook
25
star
6

distmap

DistMap
R
13
star
7

find_circ2

Find circRNAs in RNA-seq data.
Python
13
star
8

stimwrap

Jupyter Notebook
7
star
9

FLAMAnalysis

Data Analysis For FLAM-Seq Third Generation RNA Sequencing
Python
7
star
10

dropbead

HTML
6
star
11

optocoder

Python
3
star
12

find_circ

Find circRNAs in RNA-seq data.
Python
3
star
13

bioanalyzer-profile

Analyze raw data from bioanalyzer
R
2
star
14

Eskrate

R
2
star
15

octopus_microRNAs

Python
1
star
16

optocoder_scripts

Python
1
star
17

byo

python library for efficient low-level stuff to access all kinds of data and cool high level things like transcripts, splicing, etc.
Python
1
star
18

PyMAF

Easy handling of MAF files and many genomes
Python
1
star
19

SPACEGERM

SPACEGERM shiny app (archived, see GitLab for active fork)
R
1
star
20

SLAM-Drop-seq

Python
1
star