QuPath (@qupath)
  • Stars
    star
    1,044
  • Global Org. Rank 14,883 (Top 5 %)
  • Registered about 8 years ago
  • Most used languages
    Java
    80.0 %
    Python
    5.0 %
    HTML
    5.0 %
    MATLAB
    5.0 %
    SCSS
    5.0 %
  • Location ๐Ÿ‡ฌ๐Ÿ‡ง United Kingdom
  • Country Total Rank 1,439
  • Country Ranking
    Java
    81
    SCSS
    414
    MATLAB
    1,508
    Python
    5,723
    HTML
    7,198

Top repositories

1

qupath

QuPath - Bioimage analysis & digital pathology
Java
919
star
2

qupath-extension-stardist

QuPath extension to run StarDist nucleus detection
Java
34
star
3

qupath-extension-wsinfer

QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/
Java
20
star
4

qupath-extension-align

QuPath extension to interactively align images
Java
19
star
5

qupath-docs

QuPath documentation
Python
14
star
6

models

Trained models for use with QuPath
9
star
7

qupath-extension-tensorflow

Use TensorFlow from QuPath
Java
8
star
8

qupath-extension-omero-web

QuPath extension to work with images through OMERO's web API
Java
8
star
9

2022-qupath-hackathon

From 26-29 April 2022
8
star
10

qupath-bioformats-extension

Extension to add Bio-Formats image support - **QuPath v0.1.2 only**
Java
6
star
11

log-viewer

Java
5
star
12

qupath-extension-template

Template to help create a new QuPath extension
Java
5
star
13

qupath-extension-bioimageio

A QuPath extension for working with the Bioimage Model Zoo (https://bioimage.io)
Java
3
star
14

qupath-extension-djl

A QuPath extension for working with Deep Java Library (https://djl.ai)
Java
3
star
15

qupath-extension-omero

QuPath extension to work with images through OMERO's APIs
Java
3
star
16

qupath-fxtras

Reusable JavaFX tools for QuPath (and beyond)
Java
2
star
17

qupath.github.io

GitHub pages site
SCSS
2
star
18

qupath-bioimage-io

QuPath resources for Bioimage.IO
1
star
19

qupath-extension-jpen

QuPath extension using JPen for graphics tablet input
Java
1
star
20

embo

QuPath workshop as part of the EMBO Advanced Methods in Bioimage Analysis course 2021
HTML
1
star
21

datavizfx

Java
1
star
22

qupath-matlab-extension

Extension to help set up QuPath and MATLAB together - **QuPath v0.1.2 only**
MATLAB
1
star
23

qupath-macOS-extension

Extension to enable file associations on macOS - **QuPath v0.1.2 only**
Java
1
star