@quinlan-lab
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quinlan-lab

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  • Stars
    star
    1,351
  • Global Org. Rank 12,563 (Top 4 %)
  • Registered over 9 years ago
  • Most used languages
    Python
         57.1 %
    HTML
         19.0 %
    Jupyter Notebook
         9.5 %
    Rust
         4.8 %
    Nim
         4.8 %
    Nextflow     4.8 %

Top repositories

1

applied-computational-genomics

Applied Computational Genomics Course at UU: Spring 2020
HTML
935
star
2

bedder-rs

an API for intersections of genomic data
Rust
74
star
3

sllobs-biostats

HTML
69
star
4

STRling

Detect novel (and reference) STR expansions from short-read data
Nim
61
star
5

vcf2db

create a gemini-compatible database from a VCF
Python
55
star
6

ccrhtml

A small repo for storing the code for making the files and html for CCRs.
HTML
22
star
7

pathoscore

pathoscore evaluates variant pathogenicity tools and scores.
Python
21
star
8

vcftidy

normalize, left-align, trim, validate and clean VCF files
Python
20
star
9

ccr

Building the constrained coding regions (CCR) model
Python
16
star
10

bedqc

BED QC tool (in the making)
HTML
15
star
11

mendelianerror

probability of mendelian error in trios.
Python
11
star
12

recombinator

Python
5
star
13

Snakemake_Tutorial

Python
5
star
14

vcfmerge

merge VCFs
Python
3
star
15

human-rae-manuscript

code used for figure generation and statistical analysis for manuscript
Jupyter Notebook
3
star
16

ceph-dnm-manuscript

Code used for figure generation and statistical analysis for https://elifesciences.org/articles/46922
Jupyter Notebook
3
star
17

kmertools

Python
3
star
18

STRling-nf

Nextflow implementation of STRling data flow
Nextflow
3
star
19

mendacity

language-agnostic testing for inheritance models
Python
2
star
20

transcriptionary

Python
1
star
21

proj-mutator-mapping

Code for reproducing analysis and figures from https://elifesciences.org/reviewed-preprints/89096
Python
1
star