Portugues lab (@portugueslab)
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Top repositories

1

arrayqueues

Multiprocessing queues for numpy arrays using shared memory
Python
44
star
2

stytra

A modular package to control stimulation and track behaviour
Python
42
star
3

split_dataset

A minimal package for saving and reading large HDF5-based chunked arrays.
Python
15
star
4

VolumeRegistration.jl

Subpixel volumetric registration
Julia
6
star
5

Dragomir-et-al-2019-modelfit

Repository for the code accompanying the Dragmorir et al 2019. publication
Jupyter Notebook
5
star
6

Stytra-with-DeepLabCut

Example of stytra usage without zebrafish
Python
4
star
7

napari-hdf5

Python
3
star
8

lightparam

Another attempt at parameters in Python
Python
3
star
9

brunoise

2-photon scanning software in Python
Python
2
star
10

bouter

Python
1
star
11

PaddedBlocks.jl

Utilities for generating blocks for processing data, with optional padding
Julia
1
star
12

sashimi

Lightsheet control
Python
1
star
13

Knogler_etal_2019_eLife

MATLAB source code for Purkinje cell spike extraction and summary analyses
MATLAB
1
star
14

fimpy

Python
1
star
15

napari-split-dataset

hdf5/split-dataset file reader for napari
Python
1
star