@popgenmethods
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popgenmethods

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  • Stars
    star
    500
  • Global Org. Rank 23,815 (Top 8 %)
  • Registered over 9 years ago
  • Most used languages
    Python
         50.0 %
    C++
         30.0 %
    Java
         20.0 %
  • Location 🇺🇸 United States
  • Country Total Rank 16,207
  • Country Ranking
    C++
         1,640
    Python
         7,290

Top repositories

1

lecture_notes

Lecture Notes on Computational and Mathematical Population Genetics
183
star
2

smcpp

SMC++ infers population history from whole-genome sequence data.
C++
149
star
3

momi2

Infer demographic history with the Moran model
Python
47
star
4

pyrho

Fast inference of fine-scale recombination rates based on fused-LASSO
Python
42
star
5

SINGER

Sampling and inference of genealogies with recombination
C++
20
star
6

defiNETti

defiNETti is a program for performing Bayesian inference on exchangeable (or permutation-invariant) data via deep learning. In particular, it is well-suited for population genetic applications.
Python
20
star
7

LDhelmet

Software package for estimating fine-scale recombination rate.
C++
12
star
8

ldpop

Two locus likelihoods and ARGs under changing population size
Python
12
star
9

momi

MOran Models for Inference
Python
9
star
10

diCal2

diCal2 infers complex demographic histories from whole-genome sequencing data
Java
5
star
11

spectralHMM

A spectral method for inferring selection from time series data
Java
1
star