Physimals group, University of Nottingham (@physimals)
Guthub

physimals

Twitter logo Share LinkedIn logo Share Facebook logo Share

Top repositories

1

quantiphyse

Application for analysis and modelling of volumetric medical imaging data
Python
19
star
2

hcp-asl

ASL pipeline for the Human Connectome Project
Python
9
star
3

oxford_asl

A command line tool for quantification of perfusion from ASL data
Shell
6
star
4

oxasl

Python based ASL pipeline based on oxford_asl
Python
5
star
5

fabber_core

Framework for Bayesian model fitting using the Variational Bayes method and pluggable forward models
C++
3
star
6

verbena

Vascular Model Based Perfusion Quantification for DSC-MRI
Shell
2
star
7

quantiphyse-docs

Documentation for Quantiphyse
Python
2
star
8

svb

Implementation of Stochastic Variational Bayes
Python
2
star
9

fabber_models_dce

DCE models for the Fabber model fitting tool
C++
2
star
10

quantiphyse-sv

Supervoxels plugin for Quantiphyse
Python
2
star
11

dcm_convert_phillips

Custom script to convert ASL DICOM files from Phillips scanners which do not go through DCM2NIIX properly
Python
1
star
12

vaby_models_asl

ASL models for VABY framework
Python
1
star
13

svb_models_asl

ASL Models for Stochastic Variational Bayes inference framework
Python
1
star
14

quantiphyse-asl

Quantiphyse plugin for ASL-MRI data
Python
1
star
15

vaby_avb

Python implementation of Analytic Variational Bayesian inference for a nonlinear forward model
Python
1
star
16

nmedia_vb_tutorial

Jupyter Notebook
1
star
17

asl_mfree

Model-free deconvolution for multi-TE ASL data
C++
1
star
18

vervain

Python based DSC processing pipeline intended to be largely compatible with Verbena
Python
1
star
19

fabber_models_asl

Forward models using the Fabber framework for Arterial Spin Labelling MRI
C++
1
star
20

oxasl_ve

OXASL plugin for vessel-encoded ASL data
Python
1
star
21

fabber_models_dwi

Fabber models for diffusion weighted imaging
C++
1
star
22

fabber_models_cest

CEST model for the Fabber model fitting tool
C++
1
star
23

vb_tutorial

Variational Bayes tutorial materials, using analytic and stochastic methods
Jupyter Notebook
1
star
24

vaby_svb

Stochastic variational bayes using the vaby framework
Python
1
star
25

quantiphyse-datasim

Quantiphyse plugin for general perfusion imaging simulation
Python
1
star
26

vaby

Core variational bayes code in Python to be shared between SVB and AVB
Python
1
star