Phase Genomics (@phasegenomics)
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phasegenomics

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  • Stars
    star
    187
  • Global Org. Rank 41,789 (Top 14 %)
  • Registered over 8 years ago
  • Most used languages
    Python
         71.4 %
    C
         28.6 %
  • Location 🇺🇸 United States
  • Country Total Rank 30,539
  • Country Ranking
    C
         2,271
    Python
         8,717

Top repositories

1

FALCON-Phase

FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds
C
72
star
2

juicebox_scripts

A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
Python
62
star
3

hic_qc

A (very) simple script to QC Hi-C data.
Python
23
star
4

matlock

Simple tools for working with Hi-C data
C
15
star
5

polar_star

long-read depth breaking
Python
11
star
6

update_assembly

Generate two phased Juicebox .assembly files from one master .assembly for FALCON-Phase
Python
3
star
7

annotation_mover

Script for porting annotations from one set of scaffolds (usually chromosome-scale scaffolds) to another set of scaffolds generated from the exact same set of contigs.
Python
1
star