Beaulieu-Saucier Université de Montréal Pharmacogenomics Centre (@pgxcentre)
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pgxcentre

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Top repositories

1

genipe

Genome-wide imputation pipeline
Python
30
star
2

region-plot

A tool to plot significant regions of GWAS
Python
28
star
3

manhattan_generator

Manhattan plot Generator
Python
24
star
4

ExPheWAS

Browser for the results of a gene-PC based pheWAS in the UK Biobank
Jupyter Notebook
5
star
5

geneparse

Clean interface to parse genotype files
Python
4
star
6

genetest

Python package for efficient genetic association analyses
Python
3
star
7

eventhub

General purpose RESTful event processing service
Scala
2
star
8

lambda

A python script to compute genomic inflation factor
Python
2
star
9

vcf2tped

Convert a VCF to multiple TPEDs
Python
1
star
10

variant_aware_fasta

Generate variant aware fasta files.
Python
1
star
11

spark-sge

Python
1
star
12

pymegablast

A python wrapper for megablast
Python
1
star
13

aa2snp

Converts amino acid changes to SNPs (without warranty)
Python
1
star
14

pgx_dnaseq

Automatic DNA sequencing pipeline
Python
1
star
15

ref_finder

Finds the reference (and alternative) allele in the reference genome
Python
1
star
16

beelinetools

Beeline report toolkit
Python
1
star