openCOBRA (@opencobra)
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opencobra

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Top repositories

1

cobrapy

COBRApy is a package for constraint-based modeling of metabolic networks.
Python
413
star
2

cobratoolbox

The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
MATLAB
247
star
3

optlang

optlang - sympy based mathematical programming language
Python
215
star
4

memote

memote – the genome-scale metabolic model test suite
HTML
120
star
5

COBRA.jl

High-level, high-performance, constraint-based reconstruction and analysis in Julia
Julia
61
star
6

MATLAB.devTools

MATLAB Development Tools
MATLAB
27
star
7

Medusa

Analysis of ensembles of metabolic network reconstructions
Python
20
star
8

COBRA.tutorials

Repository of tutorials for The COBRA Toolbox
MATLAB
18
star
9

m_model_collection

A collection of M models downloaded from published studies
Jupyter Notebook
14
star
10

driven

Data-Driven Constraint-based analysis
Python
13
star
11

MASS-Toolbox

Mass Action Stoichiometric Simulation (MASS) Toolbox
Mathematica
11
star
12

COBRA.papers

Repository for scripts related to reproducing the results of an individual publication
MATLAB
8
star
13

cobra-component-models

Provide SQLAlchemy ORM and pydantic data models for SQL storage and serialization of COBRA components such as reactions, compounds, and compartments.
Python
3
star
14

memote-docker

Easily use the memote command line interface from a docker container.
Shell
3
star
15

cookiecutter-memote

A cookiecuttter template for memote model repositories
Python
2
star
16

cookiecutter-python-package

Extensive cookiecutter template for openCOBRA Python packages.
Python
2
star
17

schema

xml/rdf schemas for annotating cobra models
2
star
18

cobrapy_shim

Shim for the COBRA toolbox to call cobrapy functions
Python
1
star
19

cobrapy-bigg-client

Python
1
star
20

cobrapy-website

HTML
1
star
21

ctf

Chemical table files for constraint-based modelling
1
star
22

COBRA.binary

Linux, Windows and Mac binaries maintained by the constraint-based reconstruction and analysis community
MATLAB
1
star