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Australian Institute of Marine Science (@open-AIMS)

open-AIMS

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ozfish

Public dataset of Australian fish species for advancing machine learning research

ADRIA.jl

ADRIA: Adaptive Dynamic Reef Intervention Algorithms. A multi-criteria decision support platform for informing reef restoration and adaptation interventions.

bayesnec

Bayesian No-Effect-Concentration estimation in R

ereefs

Useful functions to make accessing eReefs and other CSIRO-EMS output files easier.

docker-example

A repository to teach scientists how to use Docker

gisaimsr

R package that makes multiple GBR-related GIS products available to play in R

HoloVir

HoloVir is a robust and flexible data analysis pipeline that provides an optimised and validated workflow for taxonomic and functional characterisation of viral metagenomes

CoralBlox.jl

CoralBlox is a coral growth and mortality model that simulates distinct coral functional groups indirectly competing for a limited space over time. The model does not directly consider natural disturbances nor does it have representation of anthropogenic restoration and conservation activities such as coral seeding or cloud brightening.

EcoRRAP

Useful scripts produced by EcoRRAP, a subprogram of the Reef Restoration and Adaptation Program (RRAP)

hyperspectral

code for custom hyperspectral processing

reef3D

Scripts for 3D reconstructions (Photoscan) and data analysis (e.g., structural complexity, surface area, volume)

cots_fish_trends

Fish predators control outbreaks of Crown-of-Thorns Starfish

rrap-dg

Interface to the RRAP data store and data generation processes for AIMS-RRAP

GBR-reef-guidance-assessment

data-platform-client-py

Python Client for AIMS Research Data Platform

photo_enhancer

Python program for enhancing images based on a reference MATLAB code

MADAME-app

Model Assessment and Decision Analysis for Marine Environments web application

ReefModEngine.jl

A Julia interface to the ReefMod Engine API

ADRIA-data-specs

Specifications for Domain and Result Set datapackages for use with ADRIA

MMP_WQ

Code in support of MMP water quality revamp

extractNSEC

Light_calcs

Code for calculating benthic light including DLI based on PAR and PUR

ssd_weight_methods

The repro houses simulation testing studies of different weighting methods for model averaging of SSDs

tweedie

Workspace for the brms implementation of the tweedie distribution with power parameter in [1, 2] a.k.a. tweedie compound poisson, compound poisson-gamma (CPG) distribution.

ADRIA_matlab

Repository for the development of ADRIA: Adaptive Dynamic Reef Intervention Algorithms. ADRIA is a multi-criteria decision support tool set particularly useful for informing reef restoration and adaptation interventions.

MADAME-api

Julia API for the MADAME-app

NEC-estimation

Code for No-Effect-Concentration values for concentration-response data