Explore @oist Open Source projects

Okinawa Institute of Science & Technology (@oist)

oist

Stars
391
Global Org. Rank 27,666 (Top 9 %)
Registered over 11 years ago
Most used languages

Python
26.5 %

Jupyter Notebook
14.7 %

TeX
11.8 %

HTML
8.8 %

C++
5.9 %

Shell
5.9 %

R
5.9 %

JavaScript
5.9 %

PowerShell
2.9 %

Mathematica 2.9 %

TypeScript
2.9 %

Haskell
2.9 %

Nextflow 2.9 %
Location 🇯🇵 Japan
Country Total Rank 1,617
Country Ranking

Nextflow 2

Mathematica 32

PowerShell
56

Jupyter Notebook
58

R
97

TeX
148

Haskell
368

TypeScript
724

Python
838

HTML
853

Shell
1,069

JavaScript
1,412

C++
1,802

Usiigaci

Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning

Jupyter Notebook

LaTeX-templates

Graduate School LaTeX templates for Lab rotation proposal + report, OIST beamer and Thesis + thesis proposal

optinist

calcium imaging pipeline tool

DenseObjectDetection

Detection of objects in an image using segmentation

DenseObjectAnnotation

Tool to annotate objects in images.

phylogeny-io

course-scheduler

Python code to generate course schedules for the Graduate School

treeOT

LabVIEW_Dockerfiles

Collection of Dockerfiles and PowerShell scripts to create Docker Images for LabVIEW C.I.

BioinfoUgrp

OIST Bioinfo user group

GPU_group

All important information related to the GPU User group at OIST

GenomicBreaks

Pairwise Alignment Breakpoint Analysis

Haldane_Analog

Figures and results for a magnetic model of Haldane's Honeycomb

Jupyter Notebook

varroa_parallel

Parallel genomic evolution of parasite tolerance by wild honey bee populations - source code.

oikGenomePaper

Short "custom scripts" used in the Okinawan oikopleura genome paper.

plessy_pairwiseGenomeComparison

Draft workflow for pairwise genome comparison

MobiDB

To search protein name from mobiDB

Python-Arduino-TempController

An open electronics temperature controller based on Arduino I/O and Python GUI.

LuscombeU_OikScrambling

Scrambling paper analysis in R

kitaev

Jupyter Notebook

gt_moo

multi-objective optimization of global tracking parameters

NEST

NEural Simulation Tool adapted for K and Post-K

workshop-iussi2018

Materials for the workshop on analyzing sociogenomic datasets at IUSSI2018, organized by Timothy Linksvayer and Alexander Mikheyev

LaTeX-template-phd-thesis

LaTeX Template for OIST Thesis

skillpill-git

Lecture notes for the git skillpill @OIST

LuscombeU-CAGE_libraries

Quality control and processing of CAGE libraries

BrainComputation

Brain Computation: A Hands-on Guidebook

Jupyter Notebook

LaTeX-template-OIST-posters

LaTeX Template for OIST Posters

joint-tracking-simulation

Source code for running a joint tracking model and its analysis

Jupyter Notebook

doodle-scheduler

Scheduler for a Photoshoot using a Doodle Poll

bootcamp

Code for the Programming Bootcamp

LaTeX-template-OIST-presentation

LaTeX Template for the OIST Presentation Slides

Oikopleuradioica_genomeannotation

Genome annotation of Oikopleura dioica from different geographical locations

skillpill-git-group1

Public repository for groupwork in SkillPill:Git

network-dynamics-analyzer

Scripts for analyzing neural information dynamics

psgan

modified version of famos psgan

SZE

Code written for internship on the Quantum Szilard Engine

SallanU_impressiontray

Dental impression tray for animals (Wibisana et al., 2023)