New York Genome Center (@nygenome)
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nygenome

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  • Stars
    star
    287
  • Global Org. Rank 33,145 (Top 11 %)
  • Registered about 12 years ago
  • Most used languages
    Python
         50.0 %
    Jupyter Notebook
         10.0 %
    HTML
         10.0 %
    C++
         10.0 %
    R
         10.0 %
    C
         10.0 %
  • Location ๐Ÿ‡บ๐Ÿ‡ธ United States
  • Country Total Rank 22,952
  • Country Ranking
    C
         1,556
    R
         3,192
    Python
         8,130
    C++
         8,838

Top repositories

1

lancet

Microassembly based somatic variant caller for NGS data
C
153
star
2

Conpair

Concordance and contamination estimator for tumorโ€“normal pairs
Python
54
star
3

taxmaps

Ultra-efficient taxonomic mapping of NGS data
Python
51
star
4

Lancet2

v2.x of the microassembly based somatic variant caller
C++
14
star
5

SCANVIS

SCANVIS - a toolkit for SCoring, ANnotating and VISualizing splice junctions
R
7
star
6

topmed_unmapped

Python
3
star
7

telomeasure

Telomeasure estimates average telomere length from whole genome sequencing (WGS) BAM files.
Python
3
star
8

nygc-short-alignment-marking

1
star
9

ProstateBrainMet_WGS_paper_figures

This repository contains the code necessary for reproducing the figures and custom analysis in the following manuscript: Evolution of Structural Rearrangements in Prostate Cancer Intracranial Metastases
HTML
1
star
10

UrothelialCancer_WGS_paper_figures

This repository contains the code necessary for reproducing the figures and custom analysis in the following manuscript: The Interplay between Mutagenesis and Extrachromosomal DNA Shapes Urothelial Cancer Evolution
Jupyter Notebook
1
star
11

absinthe

Python
1
star